msa-structure-prediction-pipeline
msa-structure-prediction-pipeline is an agent skill published by nvidia. It lives in the NVIDIA/skills repository, which has 3,735 GitHub stars and is licensed under Apache-2.0; we last read it on 2026-09-25.
This pipeline retrieves MSA alignments using NVIDIA-hosted APIs and predicts protein structures with OpenFold3, integrating MSA-Search (ColabFold) for homology searches. It requires no specific credentials but uses external APIs for MSA retrieval.
Install
skills is a generic installer for any repository of Claude agent skills -- it reads NVIDIA/skills’s own structure rather than assuming one, the same way this page reads the skill’s own SKILL.md rather than assuming a format.
npx skills add NVIDIA/skills
What it connects to
Unverified means a mention in the skill’s own description, not a citation. A wrong claim here costs nothing to correct and nothing to trust yet.
Maintenance
NOTE: your protein sequence and the retrieved MSA alignment are transmitted to external NVIDIA-hosted APIs (health.api.nvidia.com) on every call. Use local NIM containers for confidential or proprietary sequences. Run a complete protein structure prediction pipeline using NVIDIA BioNeMo NIMs: search for MSA alignments with MSA-Search (ColabFold), then predict the structure with OpenFold3 using the retrieved alignments. Use this skill whenever the user wants to predict a protein structure with maximum accuracy using MSA context, run the full AlphaFold3-style pipeline, generate MSA-informed structure predictions, or improve structure prediction accuracy by providing evolutionary information. Triggers on: MSA structure prediction pipeline, structure prediction pipeline, MSA-informed prediction, OpenFold3, ColabFold MSA, AlphaFold3 pipeline, protein structure, homology search, a3m alignment, UniRef30, NIM microservice. This pipeline chains MSA-Search and OpenFold3.
Common questions about msa-structure-prediction-pipeline
- What does msa-structure-prediction-pipeline do?
- This pipeline retrieves MSA alignments using NVIDIA-hosted APIs and predicts protein structures with OpenFold3, integrating MSA-Search (ColabFold) for homology searches. It requires no specific credentials but uses external APIs for MSA retrieval.
- How do I install msa-structure-prediction-pipeline?
- Run npx skills add NVIDIA/skills. The skills installer reads the repository’s own structure, so it works for any repository of agent skills.
- Who publishes msa-structure-prediction-pipeline?
- nvidia.
- Is msa-structure-prediction-pipeline maintained, and what licence does it use?
- Its repository has 3,735 GitHub stars and its state in our directory is listed. Its last commit we recorded was on 2026-10-26. The repository declares the Apache-2.0 licence.